The Coronavirus Is New, but Your Immune System Might Still Recognize It

Eight months ago, the new coronavirus was unknown. But to some of our immune cells, the virus was already something of a familiar foe.

A flurry of recent studies has revealed that a large proportion of the population — 20 to 50 percent of people in some places — might harbor immunity assassins called T cells that recognize the new coronavirus despite having never encountered it before.

These T cells, which lurked in the bloodstreams of people long before the pandemic began, are most likely stragglers from past scuffles with other, related coronaviruses, including four that frequently cause common colds. It’s a case of family resemblance: In the eyes of the immune system, germs with common roots can look alike, such that when a cousin comes to call, the body may already have an inkling of its intentions.

The presence of these T cells has intrigued experts, who said it was too soon to tell whether the cells would play a helpful, harmful or entirely negligible role in the world’s fight against the current coronavirus. But should these so-called cross-reactive T cells exert even a modest influence on the body’s immune response to the new coronavirus, they might make the disease milder — and perhaps partly explain why some people who catch the germ become very sick, while others are dealt only a glancing blow.

“If you have a population of T cells that are armed and ready to protect you, you could control the infection better than someone who doesn’t have those cross-reactive cells,” said Marion Pepper, an immunologist at the University of Washington who is studying the immune responses of Covid-19 patients. “That’s what we’re all hoping for.”

T cells are an exceptionally picky bunch. Each spends the entirety of its life waiting for a very specific trigger, like a hunk of a dangerous virus. Once that switch is flipped, the T cell will clone itself into an army of specialized soldiers, all with their sights set on the same target. Some T cells are microscopic assassins, tailor-made to home in on and destroy infected cells; others coax immune cells called B cells into producing virus-attacking antibodies.

The first time a virus infects the body, this response is sluggish; it takes several days for the immune system to sort out which T cells are best suited for the job at hand. But subsequent encounters typically prompt a response that is stronger and faster, thanks to a reserve force of T cells, called memory T cells, that lingers after the initial threat has passed and can quickly be called into action again.

Usually, this process operates best when T cells must battle the same pathogen again and again. But these recruits are more flexible than they are often given credit for, said Laura Su, an immunologist and T cell expert at the University of Pennsylvania. Should these cells chance upon something that bears a strong resemblance to their germ of choice, they can still be roused to fight, even if the invader is a total newcomer.

In theory, cross-reactive T cells can “protect almost like a vaccine,” said Smita Iyer, an immunologist at the University of California, Davis, who is studying immune responses to the new coronavirus in primates. Previous studies have shown that cross-reactive T cells may guard people against

Frequently Asked Questions

Updated August 6, 2020

  • Why are bars linked to outbreaks?

    • Think about a bar. Alcohol is flowing. It can be loud, but it’s definitely intimate, and you often need to lean in close to hear your friend. And strangers have way, way fewer reservations about coming up to people in a bar. That’s sort of the point of a bar. Feeling good and close to strangers. It’s no surprise, then, that bars have been linked to outbreaks in several states. Louisiana health officials have tied at least 100 coronavirus cases to bars in the Tigerland nightlife district in Baton Rouge. Minnesota has traced 328 recent cases to bars across the state. In Idaho, health officials shut down bars in Ada County after reporting clusters of infections among young adults who had visited several bars in downtown Boise. Governors in California, Texas and Arizona, where coronavirus cases are soaring, have ordered hundreds of newly reopened bars to shut down. Less than two weeks after Colorado’s bars reopened at limited capacity, Gov. Jared Polis ordered them to close.
  • I have antibodies. Am I now immune?

    • As of right now, that seems likely, for at least several months. There have been frightening accounts of people suffering what seems to be a second bout of Covid-19. But experts say these patients may have a drawn-out course of infection, with the virus taking a slow toll weeks to months after initial exposure. People infected with the coronavirus typically produce immune molecules called antibodies, which are protective proteins made in response to an infection. These antibodies may last in the body only two to three months, which may seem worrisome, but that’s perfectly normal after an acute infection subsides, said Dr. Michael Mina, an immunologist at Harvard University. It may be possible to get the coronavirus again, but it’s highly unlikely that it would be possible in a short window of time from initial infection or make people sicker the second time.
  • I’m a small-business owner. Can I get relief?

    • The stimulus bills enacted in March offer help for the millions of American small businesses. Those eligible for aid are businesses and nonprofit organizations with fewer than 500 workers, including sole proprietorships, independent contractors and freelancers. Some larger companies in some industries are also eligible. The help being offered, which is being managed by the Small Business Administration, includes the Paycheck Protection Program and the Economic Injury Disaster Loan program. But lots of folks have not yet seen payouts. Even those who have received help are confused: The rules are draconian, and some are stuck sitting on money they don’t know how to use. Many small-business owners are getting less than they expected or not hearing anything at all.
  • What are my rights if I am worried about going back to work?

  • What is school going to look like in September?

    • It is unlikely that many schools will return to a normal schedule this fall, requiring the grind of online learning, makeshift child care and stunted workdays to continue. California’s two largest public school districts — Los Angeles and San Diego — said on July 13, that instruction will be remote-only in the fall, citing concerns that surging coronavirus infections in their areas pose too dire a risk for students and teachers. Together, the two districts enroll some 825,000 students. They are the largest in the country so far to abandon plans for even a partial physical return to classrooms when they reopen in August. For other districts, the solution won’t be an all-or-nothing approach. Many systems, including the nation’s largest, New York City, are devising hybrid plans that involve spending some days in classrooms and other days online. There’s no national policy on this yet, so check with your municipal school system regularly to see what is happening in your community.

But cross-reactive T cells are not necessarily a benevolent force. They could instead be ineffectual souvenirs of infections past, with “absolutely no relevance” to how well people fare against the new coronavirus, Dr. Sette said.

There is even a small chance that pre-existing T cells could raise the risk for serious symptoms of Covid-19, although experts consider this possibility unlikely. T cells that are primed to recognize common-cold coronaviruses might marshal only a lackluster response to the current coronavirus, potentially sapping resources from other populations of immune cells that have a better shot at defeating the new invader. “Now you have your immune system distracted,” Dr. Iyer said.

T cells are also expert orchestrators. Depending on the signals they send out, they can synchronize cells and molecules from disparate parts of the immune system into a tag-teamed attack, or quell these assaults to return the body to baseline. If it turns out that cross-reactive T cells tend toward quieting the response, they could suppress a person’s immune defense before it has a chance to kick into gear, Dr. August said.

Then again, many types of T cells exist, and all operate as part of a complex immune system. “It’s almost like some people are trying to say this is ‘good’ or ‘bad,’” Dr. Su said. “It’s probably more nuanced than that.”

Teasing it all apart will not be easy. Unlike antibodies, which are inanimate proteins that often circulate in the blood, T cells are living cells that often hole up in hard-to-reach tissues. That makes them much more difficult to extract, maintain and analyze, Dr. Pepper said.

Researchers could learn more by testing whether cross-reactive T cells are more abundant in patients who have had mild or serious cases of Covid-19, although such studies cannot prove cause and effect. A more laborious effort might involve measuring cross-reactive T cell levels in large groups of healthy people, then waiting to see if they became infected or sick from the current coronavirus, Dr. Sette said.

Strong evidence could also come from an animal model, like the rhesus macaques that Dr. Iyer studies in her lab. Researchers could dose primates with common-cold coronaviruses, and then see how their immune responses stack up against the new coronavirus.

Less than a year into this pandemic, plenty of questions remain unanswered, Dr. Pepper said. Immunologists cannot fully forecast how the human immune system will respond to this new virus; even with science at its speediest, that interaction must be studied in real time.

It’s a frustrating reality, Dr. Pepper said: “Until we see it in real life, we just don’t know.”


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Author: Katherine J. Wu
August 8, 2020